Basic Information
Locus ID:
scaffold020226G000030
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
EBF1
Description:
EIN3-binding F-box protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold020226 | 49768 | 51687 | - | scaffold020226G000030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.41 | 68,078.23 Da | 45.27 | 107.15 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 235 | 258 | 0.13 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 368 | 391 | 0.8 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 172 | 411 | 1.24E-34 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 338 | 581 | 3.3E-34 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 44 | 86 | 1.7E-7 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 441 | 638 | 2.9E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 286 | 440 | 3.1E-18 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 285 | 7.0E-35 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 474 | 499 | 2.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 184 | 209 | 0.021 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 528 | 553 | 2.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 368 | 393 | 4.4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 501 | 526 | 19.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 394 | 419 | 370.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 554 | 578 | 76.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 262 | 287 | 0.0069 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 236 | 261 | 0.06 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 448 | 473 | 16.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 342 | 367 | 0.69 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 210 | 235 | 4.8E-7 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_010907279.1 | EIN3-binding F-box protein 1 [Elaeis guineensis] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9QDJ6 | EIN3-binding F-box protein 1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105033977 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology