Basic Information
Locus ID:
scaffold019947G000030
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold019947 | 65908 | 68325 | - | scaffold019947G000030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 46,088.91 Da | 47.21 | 88.72 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 252 | 319 | 6.50264E-43 | - |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 34 | 188 | 1.2E-35 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 258 | 303 | 4.4E-11 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 252 | 319 | 2.49E-18 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 250 | 320 | 6.1E-18 | IPR036638 |
| SMART | SM00353 | finulus | 260 | 309 | 1.6E-16 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 254 | 303 | 17.167679 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 265 | - | - |
| Coils | Coil | Coil | 427 | 430 | - | - |
| Coils | Coil | Coil | 293 | 320 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17880.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. | 0 |
| RefSeq | XP_010940945.1 | transcription factor MYC4-like [Elaeis guineensis] | 0 |
| O49687 | Transcription factor MYC4 OS=Arabidopsis thaliana OX=3702 GN=MYC4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SCD9 | transcription factor MYC4-like OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105059368 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology