Basic Information
Locus ID:
scaffold015887G000050
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold015887 | 183430 | 221799 | + | scaffold015887G000050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 64,884.00 Da | 49.64 | 64.96 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16623 | RING-HC_RBR_TRIAD1_like | 134 | 184 | 1.30722E-16 | - |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 177 | 278 | 3.6E-6 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 295 | 342 | 1.9E-9 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 297 | 345 | 6.56E-17 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 130 | 215 | 3.85E-20 | - |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 544 | 571 | 2.28E-6 | IPR036443 |
| Gene3D | G3DSA:2.30.30.380 | - | 542 | 571 | 4.8E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 128 | 215 | 1.4E-18 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 274 | 499 | 6.1E-66 | - |
| SMART | SM00647 | ibrneu5 | 203 | 278 | 2.0E-4 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 282 | 352 | 0.041 | IPR002867 |
| SMART | SM00547 | zf_4 | 546 | 570 | 2.3E-4 | IPR001876 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 130 | 356 | 45.008636 | IPR044066 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 544 | 571 | 8.185356 | IPR001876 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 134 | 178 | 9.243618 | IPR001841 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 548 | 567 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 541 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 44 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G65430.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_010930194.1 | probable E3 ubiquitin-protein ligase ARI8 isoform X1 [Elaeis guineensis] | 0 |
| Q8W468 | Probable E3 ubiquitin-protein ligase ARI8 OS=Arabidopsis thaliana OX=3702 GN=ARI8 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9RY34 | RBR-type E3 ubiquitin transferase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105051439 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology