Basic Information
Locus ID:
scaffold014438G000030
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Ras-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold014438 | 88800 | 100670 | - | scaffold014438G000030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.29 | 44,194.50 Da | 45.61 | 86.09 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01860 | Rab5_related | 10 | 167 | 6.67083E-107 | - |
| Pfam | PF00071 | Ras family | 12 | 166 | 2.5E-55 | IPR001806 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 8 | 167 | 1.29E-50 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 3 | 168 | 1.8E-60 | IPR027417 |
| SMART | SM00173 | ras_sub_4 | 12 | 166 | 1.8E-23 | - |
| SMART | SM00176 | ran_sub_2 | 16 | 206 | 2.0E-8 | - |
| SMART | SM00174 | rho_sub_3 | 13 | 170 | 4.0E-10 | IPR001806 |
| SMART | SM00175 | rab_sub_5 | 11 | 170 | 7.8E-75 | - |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 11 | 163 | 3.8E-29 | IPR005225 |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. | 6 | 202 | 29.241045 | - |
| ProSiteProfiles | PS51421 | small GTPase Ras family profile. | 5 | 315 | 15.353543 | IPR001806 |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 52 | 74 | 5.2E-36 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 114 | 127 | 5.2E-36 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 145 | 167 | 5.2E-36 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 34 | 50 | 5.2E-36 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 11 | 32 | 5.2E-36 | - |
| Coils | Coil | Coil | 273 | 307 | - | - |
| Coils | Coil | Coil | 314 | 355 | - | - |
| Coils | Coil | Coil | 217 | 244 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G45130.1 | RAB homolog 1. small GTP binding protein | 0 |
| RefSeq | XP_010940273.2 | uncharacterized protein LOC105058902 [Elaeis guineensis] | 0 |
| P31583 | Ras-related protein RHN1 OS=Nicotiana plumbaginifolia OX=4092 GN=RHN1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SB45 | uncharacterized protein LOC105058902 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105058902 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10797, jg6138 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1459 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023798 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_1g008390, BVRB_3g060290 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29386, Sbi_jg3609 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6350 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000810 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11992, Sgl15968 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012732, gene:ENSEOMG00000033614 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.1BG0014620 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30041420 |
| Apiaceae | Apium graveolens | 1 | Ag11G03745 |
| Arecaceae | Cocos nucifera | 3 | COCNU_09G005900, COCNU_09G005910, scaffold014438G000030 |
| Arecaceae | Phoenix dactylifera | 5 | gene-LOC103717588, gene-LOC103723692, gene-LOC113463167 ... |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1066.V1.1, AsparagusV1_09.1396.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri16G16790 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT1G14680.1, AT4G09060.2 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10008342m.g.v1.0, Thhalv10028816m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp1g13060.v2.2, Sp6g08460.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB02g009620.2N, BniB06g039990.2N, BniB08g035130.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq01G0120, Ceq03G2201 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2344 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno03g04760, gene.Cymno10g08730 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate02g13490, gene.Thate08g16810 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2086 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1544 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037206 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G15400 |
| Poaceae | Echinochloa crus-galli | 4 | AH07.4048, BH07.3863, CH07.3929, Contig1910.3 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0151660, gene-QOZ80_2BG0207030 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0633800.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G026260, Oco04G026680 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g58470.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G330100 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0105639, Pt_Chr0105665 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr09G026970, Chr13G000170, Chr13G000180 |
| Poaceae | Thinopyrum elongatum | 4 | Tel2E01G787800, Tel4E01G138000, Tel4E01G138100 ... |
| Poaceae | Triticum dicoccoides | 7 | gene_TRIDC1AG007730, gene_TRIDC2AG072590 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS1D02G008100.1, TraesCS6B02G466400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb259540_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-38873 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17485 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1835, evm.TU.LG06.529 |
| Posidoniaceae | Posidonia oceanica | 3 | gene.Posoc02g10420, gene.Posoc02g11620, gene.Posoc06g16000 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.962, evm.TU.Scaffold_8_RagTag.778 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18968, nbisL1-mrna-9457 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-13317, nbisL1-mrna-18038 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-20506, nbisL1-mrna-6793 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.732, evm.TU.utg000018l.499 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003719, Maker00010590 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-3007, nbisL1-mrna-8236 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20287, nbisL1-mrna-9980 |
| Salicaceae | Populus euphratica | 1 | populus_peu32221 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132620184, gene-LOC132627575 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016011 |
| Tamaricaceae | Reaumuria soongarica | 2 | gene_15702, gene_8662 |
| Tamaricaceae | Tamarix chinensis | 2 | TC03G2958, TC09G1096 |
| Zosteraceae | Zostera marina | 2 | Zosma03g28080.v3.1, Zosma05g23210.v3.1 |