Basic Information
Locus ID:
scaffold014035G000050
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
CPK24
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold014035 | 334939 | 338270 | + | scaffold014035G000050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 43,105.26 Da | 34.53 | 85.78 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 289 | 348 | 3.99128E-18 | IPR002048 |
| Pfam | PF13833 | EF-hand domain pair | 226 | 273 | 4.1E-7 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 55 | 167 | 3.1E-24 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 285 | 348 | 2.6E-12 | IPR002048 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 54 | 168 | 4.24E-30 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 196 | 371 | 8.33E-44 | IPR011992 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 59 | 135 | 3.4E-33 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 176 | 350 | 3.2E-50 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 97 | 169 | 3.4E-33 | - |
| SMART | SM00054 | efh_1 | 250 | 278 | 1.7 | IPR002048 |
| SMART | SM00054 | efh_1 | 214 | 242 | 0.0033 | IPR002048 |
| SMART | SM00054 | efh_1 | 322 | 350 | 1.8E-5 | IPR002048 |
| SMART | SM00054 | efh_1 | 286 | 314 | 2.9E-4 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 282 | 317 | 14.792358 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 318 | 353 | 13.955498 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 210 | 245 | 14.094975 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 246 | 281 | 9.408546 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 55 | 382 | 17.191904 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 331 | 343 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 295 | 307 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 61 | 84 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 259 | 271 | - | IPR018247 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G12480.1 | calmodulin-domain protein kinase 7. calmodulin-domain protein kinase CDPK isoform 7 (CPK7) | 0 |
| RefSeq | XP_029122402.1 | calcium-dependent protein kinase 29 [Elaeis guineensis] | 0 |
| Q2QVG8 | Calcium-dependent protein kinase 29 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK29 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9RQ76 | calcium-dependent protein kinase 29 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105051444 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16308 |
| Arecaceae | Cocos nucifera | 3 | scaffold014035G000030, scaffold014035G000040 ... |
| Posidoniaceae | Posidonia oceanica | 14 | gene.Posoc01g21110, gene.Posoc02g09000, gene.Posoc02g20180 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1078 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15578 |
| Salicaceae | Populus euphratica | 1 | populus_peu35870 |
| Zosteraceae | Zostera marina | 1 | Zosma03g11290.v3.1 |