Basic Information
Locus ID:
scaffold014035G000040
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
CPK24
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold014035 | 332535 | 333909 | + | scaffold014035G000040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 19,825.74 Da | 41.93 | 87.57 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 55 | 169 | 2.6E-25 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 54 | 170 | 3.69E-31 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 59 | 135 | 3.3E-34 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 97 | 170 | 3.3E-34 | - |
| SMART | SM00220 | serkin_6 | 55 | 176 | 3.2E-6 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 55 | 177 | 18.887983 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 61 | 84 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_017701911.2 | calcium-dependent protein kinase 29-like [Phoenix dactylifera] | 0 |
| Q2QVG8 | Calcium-dependent protein kinase 29 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK29 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7MWS0 | calcium-dependent protein kinase 29-like OS=Phoenix dactylifera OX=42345 GN=LOC103722163 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16308 |
| Arecaceae | Cocos nucifera | 3 | scaffold014035G000030, scaffold014035G000040 ... |
| Posidoniaceae | Posidonia oceanica | 14 | gene.Posoc01g21110, gene.Posoc02g09000, gene.Posoc02g20180 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_6_RagTag.1078 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-15578 |
| Salicaceae | Populus euphratica | 1 | populus_peu35870 |
| Zosteraceae | Zostera marina | 1 | Zosma03g11290.v3.1 |