Basic Information
Locus ID:
scaffold013686G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
NTMC2T2.1
Description:
C2 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold013686 | 12723 | 27162 | + | scaffold013686G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 57,125.47 Da | 27.08 | 103.80 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 382 | 482 | 3.40216E-27 | - |
| CDD | cd00030 | C2 | 203 | 305 | 1.02527E-24 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 11 | 187 | 9.2E-15 | IPR039010 |
| Pfam | PF00168 | C2 domain | 380 | 481 | 2.5E-23 | IPR000008 |
| Pfam | PF00168 | C2 domain | 201 | 305 | 2.1E-21 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 199 | 331 | 1.71E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 377 | 499 | 3.84E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 194 | 329 | 8.4E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 362 | 498 | 6.4E-34 | IPR035892 |
| SMART | SM00239 | C2_3c | 381 | 479 | 2.4E-22 | IPR000008 |
| SMART | SM00239 | C2_3c | 202 | 302 | 5.9E-21 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 6 | 188 | 29.722326 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 362 | 480 | 20.754667 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 182 | 303 | 19.483463 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 397 | 409 | 2.0E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 423 | 436 | 2.0E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 445 | 453 | 2.0E-5 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_010913335.1 | synaptotagmin-5 [Elaeis guineensis] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9QS79 | synaptotagmin-5 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105039055 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology