Basic Information
Locus ID:
scaffold013488G000020
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Anaphase-promoting complex subunit cdc20
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold013488 | 11586 | 12818 | + | scaffold013488G000020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.99 | 45,690.21 Da | 44.08 | 83.98 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 112 | 383 | 8.76505E-41 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 348 | 382 | 0.11 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 260 | 298 | 0.18 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 208 | 244 | 2.8E-6 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 130 | 185 | 1.7E-6 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 97 | 382 | 2.32E-58 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 37 | 385 | 4.6E-112 | IPR015943 |
| SMART | SM00320 | WD40_4 | 163 | 201 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 244 | 3.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 301 | 341 | 120.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 256 | 298 | 0.0058 | IPR001680 |
| SMART | SM00320 | WD40_4 | 119 | 160 | 5.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 1.4E-4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 128 | 169 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 351 | 382 | 9.361965 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 212 | 246 | 11.312864 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 351 | 382 | 11.176815 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 128 | 160 | 9.361965 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 212 | 253 | 13.983944 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 231 | 245 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_010911345.1 | cell division cycle 20.2, cofactor of APC complex [Elaeis guineensis] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9QLH0 | cell division cycle 20.2, cofactor of APC complex OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105037370 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology