Basic Information
Locus ID:
scaffold012839G000020
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
NAC domain transcription factor superfamily protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold012839 | 19135 | 24827 | - | scaffold012839G000020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 51,300.00 Da | 51.03 | 68.78 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02365 | No apical meristem (NAM) protein | 58 | 196 | 1.2E-22 | IPR003441 |
| SUPERFAMILY | SSF101941 | NAC domain | 42 | 215 | 8.5E-40 | IPR036093 |
| Gene3D | G3DSA:2.170.150.80 | NAC domain | 66 | 220 | 3.5E-31 | IPR036093 |
| ProSiteProfiles | PS51005 | NAC domain profile. | 57 | 215 | 31.749561 | IPR003441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25580.1 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein. Encodes suppressor of gamma response 1 (SOG1), a putative transcription factor governing multiple responses to DNA damage. | 0 |
| RefSeq | XP_010932619.1 | SUPPRESSOR OF GAMMA RESPONSE 1 [Elaeis guineensis] | 0 |
| Q6NQK2 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=SOG1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9RU53 | SUPPRESSOR OF GAMMA RESPONSE 1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105053225 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology