Basic Information
Locus ID:
scaffold012427G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
RNA polymerase II C-terminal domain phosphatase-like 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold012427 | 61337 | 138059 | - | scaffold012427G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 114,833.98 Da | 53.60 | 76.50 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 190 | 320 | 2.01501E-19 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 795 | 856 | 3.8E-4 | IPR014720 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 659 | 719 | 1.8E-5 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 133 | 318 | 6.0E-9 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 791 | 867 | 4.8E-11 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 655 | 719 | 1.01E-10 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 121 | 325 | 5.44E-20 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 651 | 729 | 1.2E-7 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 122 | 350 | 1.1E-26 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 790 | 878 | 9.3E-7 | - |
| SMART | SM00577 | forpap2 | 187 | 329 | 1.6E-13 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 656 | 720 | 8.2E-10 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 792 | 860 | 1.9E-4 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 126 | 345 | 16.795328 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 655 | 721 | 11.358473 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 791 | 861 | 12.013933 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 509 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_010932999.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 [Elaeis guineensis] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9S3Z9 | protein-serine/threonine phosphatase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105053508 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology