Basic Information
Locus ID:
scaffold011975G000040
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold011975 | 82129 | 89732 | - | scaffold011975G000040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 37,738.26 Da | 19.07 | 99.74 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02242 | cupin_11S_legumin_N | 4 | 174 | 1.43511E-63 | - |
| CDD | cd02243 | cupin_11S_legumin_C | 204 | 343 | 1.08892E-56 | - |
| Pfam | PF00190 | Cupin | 12 | 157 | 1.4E-18 | IPR006045 |
| Pfam | PF00190 | Cupin | 201 | 337 | 1.3E-18 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 15 | 343 | 7.44E-42 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 5 | 177 | 2.0E-32 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 199 | 348 | 4.2E-39 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 196 | 340 | 5.4E-13 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 3 | 158 | 2.9E-23 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 317 | 334 | 2.0E-10 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 295 | 313 | 2.0E-10 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 212 | 232 | 2.0E-10 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 277 | 292 | 2.0E-10 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 259 | 275 | 2.0E-10 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_010935327.1 | 11S globulin seed storage protein 2 [Elaeis guineensis] | 0 |
| E3SH28 | Prunin 1 Pru du 6.0101 OS=Prunus dulcis OX=3755 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9S0Z5 | 11S globulin seed storage protein 2 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105055254 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology