Basic Information
Locus ID:
scaffold011582G000030
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold011582 | 15837 | 16712 | + | scaffold011582G000030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.22 | 30,982.35 Da | 48.62 | 89.24 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 246 | 287 | 7.7E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 236 | 290 | 6.03E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 235 | 291 | 2.3E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 246 | 286 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 246 | 287 | 12.799091 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_038981138.1 | uncharacterized protein LOC120110385 [Phoenix dactylifera] | 0 |
| O55176 | E3 ubiquitin-protein ligase Praja-1 OS=Mus musculus OX=10090 GN=Pja1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8B9AB40 | uncharacterized protein LOC120110385 OS=Phoenix dactylifera OX=42345 GN=LOC120110385 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | scaffold011582G000020, scaffold011582G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120110385 |