Basic Information
Locus ID:
scaffold011582G000020
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold011582 | 7652 | 9118 | + | scaffold011582G000020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.42 | 35,787.59 Da | 36.30 | 89.42 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 275 | 316 | 1.24199E-15 | - |
| Pfam | PF13639 | Ring finger domain | 274 | 316 | 3.6E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 271 | 320 | 2.95E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 267 | 326 | 1.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 275 | 315 | 5.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 275 | 316 | 12.754832 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18760.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_038981138.1 | uncharacterized protein LOC120110385 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B9AB40 | uncharacterized protein LOC120110385 OS=Phoenix dactylifera OX=42345 GN=LOC120110385 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | scaffold011582G000020, scaffold011582G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120110385 |