Basic Information
Locus ID:
scaffold010452G000020
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Short Name:
RPL18
Description:
60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold010452 | 24521 | 36429 | - | scaffold010452G000020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.54 | 35,312.13 Da | 34.93 | 97.77 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01472 | PUA domain | 3 | 52 | 1.5E-7 | IPR002478 |
| Pfam | PF01472 | PUA domain | 89 | 127 | 1.1E-5 | IPR002478 |
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 134 | 319 | 8.5E-93 | IPR021131 |
| SUPERFAMILY | SSF88697 | PUA domain-like | 89 | 132 | 6.15E-7 | IPR015947 |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 153 | 271 | 9.81E-27 | IPR036227 |
| SUPERFAMILY | SSF88697 | PUA domain-like | 2 | 30 | 8.08E-6 | IPR015947 |
| Gene3D | G3DSA:3.100.10.10 | - | 134 | 319 | 9.2E-97 | - |
| Gene3D | G3DSA:2.30.130.10 | PUA domain | 81 | 133 | 2.6E-10 | IPR036974 |
| Gene3D | G3DSA:2.30.130.10 | PUA domain | 1 | 60 | 7.7E-9 | IPR036974 |
| TIGRFAM | TIGR00451 | unchar_dom_2: uncharacterized domain 2 | 3 | 43 | 4.8E-8 | IPR004521 |
| ProSiteProfiles | PS50890 | PUA domain profile. | 1 | 128 | 11.997009 | - |
| ProSitePatterns | PS01106 | Ribosomal protein L18e signature. | 182 | 199 | - | IPR021132 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05590.1 | ribosomal protein L18. Encodes cytoplasmic ribosomal protein L18. | 0 |
| RefSeq | XP_034707149.1 | uncharacterized protein LOC117930626 [Vitis riparia] | 0 |
| P42791 | Large ribosomal subunit protein eL18y OS=Arabidopsis thaliana OX=3702 GN=RPL18B PE=1 SV=2 | 0 | |
| TrEMBL | A0A6A1UNZ6 | 60S ribosomal protein L18-3 OS=Morella rubra OX=262757 GN=CJ030_MR8G020223 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology