Basic Information
Locus ID:
scaffold009298G000120
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
F-box domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold009298 | 386726 | 387871 | - | scaffold009298G000120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 40,382.19 Da | 44.44 | 73.60 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 171 | 217 | 2.8E-11 | IPR006652 |
| Pfam | PF01344 | Kelch motif | 128 | 168 | 2.1E-5 | IPR006652 |
| Pfam | PF00646 | F-box domain | 11 | 50 | 3.1E-5 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 100 | 365 | 1.28E-41 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 53 | 2.22E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 61 | 1.5E-7 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 89 | 373 | 1.3E-37 | IPR015915 |
| SMART | SM00612 | kelc_smart | 134 | 182 | 6.3E-7 | IPR006652 |
| SMART | SM00612 | kelc_smart | 183 | 230 | 3.3E-4 | IPR006652 |
| SMART | SM00256 | fbox_2 | 13 | 52 | 0.0034 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G59940.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_008801509.2 | F-box/kelch-repeat protein SKIP20-like [Phoenix dactylifera] | 0 |
| Q9M1Y1 | F-box/kelch-repeat protein SKIP20 OS=Arabidopsis thaliana OX=3702 GN=SKIP20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B7CLI3 | F-box/kelch-repeat protein SKIP20-like OS=Phoenix dactylifera OX=42345 GN=LOC103715603 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology