Basic Information
Locus ID:
scaffold009168G000020
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold009168 | 144041 | 147335 | - | scaffold009168G000020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 32,133.52 Da | 44.33 | 105.32 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 220 | 256 | 8.7E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 219 | 258 | 1.39E-8 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 189 | 266 | 5.9E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 218 | 257 | 8.7E-9 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 225 | 258 | 14.05078 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 21 | 53 | 7.987474 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 54 | 111 | 9.113237 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 225 | 258 | 11.629227 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 244 | 258 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_010906218.1 | WD repeat-containing protein 26 homolog [Elaeis guineensis] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8ZEP2 | WD repeat-containing protein 26 homolog OS=Phoenix dactylifera OX=42345 GN=LOC103722740 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology