Basic Information
Locus ID:
scaffold008771G000020
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
F-box LRR-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold008771 | 88782 | 94012 | - | scaffold008771G000020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.61 | 34,245.33 Da | 37.48 | 94.62 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF81383 | F-box domain | 24 | 82 | 1.31E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 119 | 258 | 2.94E-10 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 85 | 278 | 1.9E-14 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 22 | 70 | 7.5E-10 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G48880.1 | RNI-like superfamily protein. | 0 |
| RefSeq | XP_019706651.1 | F-box/LRR-repeat protein At3g48880 [Elaeis guineensis] | 0 |
| Q9M2Z5 | F-box/LRR-repeat protein At3g48880 OS=Arabidopsis thaliana OX=3702 GN=At3g48880 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6J0PJM7 | F-box/LRR-repeat protein At3g48880 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105046947 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | scaffold008771G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712626 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g15570 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.1532, BH01.1733, CH01.1808 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0188620.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067205 |
| Poaceae | Oryza coarctata | 1 | Oco05G016910 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g36439.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G171500 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G028080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G698300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG059020, gene_TRIDC2BG062130 |
| Poaceae | Triticum aestivum | 4 | TraesCS2A02G408800.1, TraesCS2B02G427100.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb219960_P001, Zm00001eb344250_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-20525 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3158 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g18310 |