Basic Information
Locus ID:
scaffold007799G000020
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Ubiquitin fusion degradation protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold007799 | 156765 | 159367 | + | scaffold007799G000020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.02 | 19,677.53 Da | 49.16 | 83.51 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 3 | 87 | 5.6E-36 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 1 | 78 | 1.8E-38 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 79 | 138 | 3.0E-21 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_010940943.1 | ubiquitin fusion degradation protein 1 homolog [Elaeis guineensis] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | B3TLZ5 | Ubiquitin fusion degradation protein OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105059367 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology