Basic Information
Locus ID:
scaffold007470G000050
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold007470 | 121304 | 127389 | + | scaffold007470G000050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 30,682.24 Da | 38.85 | 92.76 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 52 | 132 | 3.70838E-51 | - |
| Pfam | PF07650 | KH domain | 57 | 130 | 2.1E-12 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 143 | 225 | 6.6E-25 | IPR001351 |
| Pfam | PF07650 | KH domain | 2 | 48 | 6.3E-6 | IPR004044 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 1 | 47 | 3.75E-11 | IPR009019 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 47 | 136 | 4.8E-26 | IPR009019 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 130 | 228 | 5.1E-28 | IPR036419 |
| Gene3D | G3DSA:3.30.1140.32 | - | 130 | 256 | 2.4E-66 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 47 | 128 | 1.0E-44 | IPR015946 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 46 | 6.3E-22 | IPR015946 |
| SMART | SM00322 | kh_6 | 79 | 148 | 0.044 | IPR004087 |
| SMART | SM00322 | kh_6 | 1 | 62 | 13.0 | IPR004087 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 46 | 247 | 7.8E-71 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 58 | 129 | 11.351615 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 184 | 220 | - | IPR018280 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 252 | 272 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_010932432.1 | 40S ribosomal protein S3-3 isoform X1 [Elaeis guineensis] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A4P1QZH6 | 30S ribosomal protein S3, chloroplastic OS=Lupinus angustifolius OX=3871 GN=TanjilG_16693 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology