Basic Information
Locus ID:
scaffold007249G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold007249 | 20765 | 51094 | - | scaffold007249G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.62 | 130,655.32 Da | 39.27 | 85.16 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 627 | 663 | 0.25 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 911 | 945 | 5.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 331 | 576 | 2.56E-20 | IPR036322 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 526 | 1041 | 1.26E-43 | IPR011047 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 969 | 1101 | 2.56E-7 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 612 | 720 | 4.3E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 829 | 1102 | 6.3E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 466 | 611 | 9.3E-14 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 329 | 463 | 1.2E-9 | IPR015943 |
| SMART | SM00320 | WD40_4 | 906 | 945 | 5.4E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 623 | 663 | 0.02 | IPR001680 |
| SMART | SM00320 | WD40_4 | 995 | 1037 | 54.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 533 | 574 | 8.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 620 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 337 | 376 | 0.037 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1060 | 1092 | 470.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 9.3E-5 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 3.2E-13 | IPR006595 |
| SMART | SM00320 | WD40_4 | 419 | 458 | 0.037 | IPR001680 |
| SMART | SM00320 | WD40_4 | 863 | 903 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 818 | 860 | 81.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 913 | 954 | 13.783434 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.173097 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 641 | 672 | 9.906923 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.071995 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 913 | 948 | 11.049229 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 932 | 946 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_010921589.1 | protein TPR1 isoform X2 [Elaeis guineensis] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9R713 | protein TPR1 isoform X2 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105045131 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology