Basic Information
Locus ID:
scaffold006850G000050
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold006850 | 105731 | 106856 | - | scaffold006850G000050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.11 | 32,350.67 Da | 40.96 | 51.78 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 66 | 296 | 3.2082E-121 | - |
| CDD | cd00035 | ChtBD1 | 8 | 46 | 2.69439E-17 | - |
| Pfam | PF00187 | Chitin recognition protein | 8 | 45 | 7.0E-14 | IPR001002 |
| Pfam | PF00182 | Chitinase class I | 65 | 296 | 4.9E-142 | IPR000726 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 62 | 303 | 5.91E-115 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 8 | 53 | 4.45E-13 | IPR036861 |
| Gene3D | G3DSA:3.30.60.10 | - | 6 | 48 | 3.8E-16 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 148 | 205 | 2.1E-126 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 70 | 302 | 2.1E-126 | - |
| SMART | SM00270 | ChitinBD_3 | 8 | 45 | 1.2E-17 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 303 | 1.7E-128 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 6 | 47 | 11.00517 | IPR001002 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 18 | 37 | - | IPR018371 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 209 | 219 | - | IPR000726 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 83 | 105 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 16 | 24 | 4.4E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 24 | 31 | 4.4E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 31 | 38 | 4.4E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_010941404.1 | chitinase 1 [Elaeis guineensis] | 0 |
| P93680 | Endochitinase OS=Persea americana OX=3435 GN=chi1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9SKR7 | chitinase OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105059691 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology