Basic Information
Locus ID:
scaffold006700G000030
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Transport inhibitor response 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold006700 | 74141 | 76183 | + | scaffold006700G000030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.89 | 67,141.43 Da | 53.63 | 94.96 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 99 | 144 | 2.1E-21 | IPR041101 |
| Pfam | PF13516 | Leucine Rich repeat | 321 | 337 | 0.72 | IPR001611 |
| Pfam | PF18511 | F-box | 39 | 78 | 7.1E-18 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 98 | 568 | 5.49E-31 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 37 | 72 | 6.15E-5 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 78 | 605 | 1.3E-158 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 36 | 77 | 3.7E-15 | - |
| SMART | SM00367 | LRR_CC_2 | 136 | 160 | 700.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 463 | 486 | 93.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 346 | 369 | 720.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 161 | 186 | 52.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 403 | 427 | 31.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 512 | 536 | 200.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 370 | 402 | 580.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 34 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G49980.1 | auxin F-box protein 5. | 0 |
| RefSeq | XP_010926346.1 | transport inhibitor response 1-like protein [Elaeis guineensis] | 0 |
| Q9LTX2 | Transport inhibitor response 1-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g49980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9RGI5 | transport inhibitor response 1-like protein OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105048656 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1471 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023759 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g008060 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00001003 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl10541, Sgl15797 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015688, gene:ENSEOMG00000033218 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0011000, CQ.Regalona.r1.1BG0014870 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30041620 |
| Apiaceae | Apium graveolens | 1 | Ag3G00056 |
| Arecaceae | Cocos nucifera | 5 | COCNU_03G007320, COCNU_13G003670, scaffold000319G000020 ... |
| Arecaceae | Phoenix dactylifera | 4 | gene-LOC103701789, gene-LOC103711008, gene-LOC103719084 ... |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G29688, Ftri9G28513 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G24390.2, AT5G49980.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10024671m.g.v1.0, Thhalv10024672m.g.v1.0 |
| Brassicaceae | Brassica nigra | 2 | BniB05g012810.2N, BniB08g033810.2N |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq03G1234, Ceq08G0060 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1339 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g02430 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g04640 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1550 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb0G37894, Lb1G03721 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.4720, AH07.3555, AH07.3558, BH07.3372, CH01.5296 ... |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_2AG0146510, gene-QOZ80_2BG0202030 ... |
| Poaceae | Hordeum vulgare | 6 | HORVU.MOREX.r3.4HG0344800.1, HORVU.MOREX.r3.4HG0406350.1 ... |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_017453, gene-QYE76_025543, gene-QYE76_028674 |
| Poaceae | Oryza coarctata | 5 | Oco03G022230, Oco04G022870, Oco05G004900, Oco06G005020 ... |
| Poaceae | Oryza sativa | 2 | LOC_Os02g52230.1, LOC_Os03g08850.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_01G455200, gene-BS78_04G286200 |
| Poaceae | Puccinellia tenuiflora | 6 | Pt_Chr0101407, Pt_Chr0101422, Pt_Chr0203220, Pt_Chr0203225 ... |
| Poaceae | Sporobolus alterniflorus | 8 | Chr01G025800, Chr04G002480, Chr06G001690, Chr07G008760 ... |
| Poaceae | Thinopyrum elongatum | 3 | Tel4E01G505400, Tel6E01G561600, Tel7E01G286200 |
| Poaceae | Triticum dicoccoides | 6 | gene_TRIDC4AG000170, gene_TRIDC4BG051700 ... |
| Poaceae | Triticum aestivum | 8 | TraesCS4A02G001800.1, TraesCS4D02G301800.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb006610_P001, Zm00001eb193850_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-2680, nbis-gene-4263, nbis-gene-4265 |
| Poaceae | Zoysia macrostachya | 4 | Zma_g17195, Zma_g1913, Zma_g4268, Zma_g4269 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1860, evm.TU.LG06.495 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g29970 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_7_RagTag.945, evm.TU.Scaffold_8_RagTag.798 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-18953, nbisL1-mrna-9440 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-18052, nbisL1-mrna-18087 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-20524, nbisL1-mrna-6777, nbisL1-mrna-6778 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000002l.722, evm.TU.utg000018l.486 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00003733, Maker00010607 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11515, nbisL1-mrna-13043 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-10190, nbisL1-mrna-17021 |
| Salicaceae | Populus euphratica | 2 | populus_peu14389, populus_peu32210 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627596 |
| Solanaceae | Solanum chilense | 1 | SOLCI004089600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017722 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.8520_chr06_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2540 |
| Zosteraceae | Zostera marina | 2 | Zosma01g14730.v3.1, Zosma06g17000.v3.1 |