Basic Information
Locus ID:
scaffold006554G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Protein tyrosine kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold006554 | 42836 | 45202 | + | scaffold006554G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.47 | 77,185.43 Da | 52.32 | 88.43 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 12 | 51 | 5.2E-4 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 393 | 588 | 1.4E-29 | IPR000719 |
| SUPERFAMILY | SSF52058 | L domain-like | 10 | 193 | 8.69E-34 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 393 | 679 | 4.86E-58 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 11 | 197 | 1.7E-39 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 367 | 464 | 2.8E-19 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 465 | 696 | 1.1E-44 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 389 | 684 | 30.138647 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 375 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 690 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 345 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 715 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 223 | 248 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 248 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G36570.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_029118342.1 | leucine-rich repeat receptor-like protein kinase PXC1 [Elaeis guineensis] | 0 |
| Q9SJQ1 | Leucine-rich repeat receptor-like protein kinase PXC1 OS=Arabidopsis thaliana OX=3702 GN=PXC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8N4EUY4 | leucine-rich repeat receptor-like protein kinase PXC1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105038187 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg15031, jg32661, jg3551 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14397 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah030822 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g160640 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg27488, Sbi_jg33224 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7941 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00005647 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl71368, Sgl74961 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000008337, gene:ENSEOMG00000036686 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7AG0019430, CQ.Regalona.r1.7BG0022030 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30274540 |
| Apiaceae | Apium graveolens | 2 | Ag2G02948, Ag3G02619 |
| Arecaceae | Cocos nucifera | 2 | scaffold006554G000010, scaffold014006G000020 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696326, gene-LOC103723838 |
| Asteraceae | Flaveria trinervia | 1 | Ftri12G17426 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G36570.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016353m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g18860.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g023110.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1513 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1568 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g00030 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g16620 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10899 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2153 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004949 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb2G09775, Lb2G09776, Lb2G09783, Lb2G09784 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.183, BH05.211, CH05.268 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_5AG0381280, gene-QOZ80_5BG0428330 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0459420.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003145 |
| Poaceae | Oryza coarctata | 2 | Oco23G001680, Oco24G001220 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g05120.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_05G047000 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0703115, Pt_Chr0703154 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G022050, Chr06G023770, Chr07G021420, Chr31G000900 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G236800 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG022810, gene_TRIDC5BG023140 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G130900.1, TraesCS5B02G130800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb092850_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-25664 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24726 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.471, evm.TU.LG04.289 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc05g23130 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_1_RagTag.1470 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-6125 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4533 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-3988 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000016l.487 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00016534 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-7661 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-416 |
| Salicaceae | Populus euphratica | 1 | populus_peu11594 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132629925 |
| Solanaceae | Solanum chilense | 1 | SOLCI000085900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107029143 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.234_chr01_+, STRG.27526_chr04_- |
| Tamaricaceae | Tamarix chinensis | 2 | TC00000026, TC02G2550 |
| Zosteraceae | Zostera marina | 1 | Zosma05g03570.v3.1 |