Basic Information
Locus ID:
scaffold004647G000050
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold004647 | 663685 | 669340 | - | scaffold004647G000050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.38 | 60,348.21 Da | 36.54 | 85.91 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15898 | EFh_PI-PLC | 361 | 493 | 7.97368E-16 | - |
| CDD | cd00051 | EFh | 432 | 494 | 2.17961E-16 | IPR002048 |
| CDD | cd05117 | STKc_CAMK | 54 | 312 | 3.69556E-142 | - |
| Pfam | PF00069 | Protein kinase domain | 55 | 313 | 7.0E-77 | IPR000719 |
| Pfam | PF13499 | EF-hand domain pair | 360 | 419 | 2.5E-8 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 431 | 494 | 8.5E-15 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 342 | 520 | 1.67E-43 | IPR011992 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 38 | 338 | 2.83E-89 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 57 | 140 | 1.9E-29 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 322 | 496 | 3.8E-52 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 141 | 321 | 1.5E-59 | - |
| SMART | SM00220 | serkin_6 | 55 | 313 | 8.4E-103 | IPR000719 |
| SMART | SM00054 | efh_1 | 396 | 424 | 1.1 | IPR002048 |
| SMART | SM00054 | efh_1 | 432 | 460 | 0.0011 | IPR002048 |
| SMART | SM00054 | efh_1 | 468 | 496 | 9.4E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 360 | 388 | 1.9E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 464 | 499 | 14.039183 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 356 | 391 | 15.154999 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 392 | 427 | 9.63171 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 428 | 463 | 12.979158 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 55 | 313 | 50.321999 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 369 | 381 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 405 | 417 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 477 | 489 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 175 | 187 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 61 | 84 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 441 | 453 | - | IPR018247 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_010931028.1 | calcium-dependent protein kinase 20 [Elaeis guineensis] | 0 |
| Q84SL0 | Calcium-dependent protein kinase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9RR42 | calcium-dependent protein kinase 20 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105052035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology