Basic Information
Locus ID:
scaffold004549G000020
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Nucleolysin TIAR
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold004549 | 41298 | 52344 | - | scaffold004549G000020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.55 | 45,759.67 Da | 47.85 | 72.76 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 57 | 127 | 9.28491E-37 | - |
| CDD | cd12354 | RRM3_TIA1_like | 261 | 333 | 2.99432E-35 | - |
| CDD | cd12619 | RRM2_PUB1 | 141 | 215 | 4.20533E-52 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 142 | 212 | 9.9E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 57 | 123 | 2.5E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 263 | 329 | 1.3E-11 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 134 | 234 | 3.22E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 44 | 133 | 8.6E-24 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 247 | 339 | 2.58E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 138 | 239 | 1.3E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 137 | 1.2E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 240 | 339 | 1.3E-22 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 262 | 331 | 3.1E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 141 | 214 | 9.7E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 56 | 125 | 9.6E-18 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 141 | 214 | 4.6E-4 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 262 | 331 | 21.0 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 140 | 218 | 17.301737 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 261 | 335 | 15.647363 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 55 | 129 | 15.630307 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 217 | 256 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_010937306.1 | oligouridylate-binding protein 1B isoform X1 [Elaeis guineensis] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9S3X8 | oligouridylate-binding protein 1B isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105056701 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology