Basic Information
Locus ID:
scaffold004036G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold004036 | 75390 | 81103 | + | scaffold004036G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.69 | 44,216.81 Da | 42.41 | 89.44 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 177 | 199 | 0.038 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 113 | 375 | 2.75E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 68 | 382 | 2.2E-60 | IPR015943 |
| SMART | SM00320 | WD40_4 | 294 | 333 | 53.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 162 | 200 | 0.049 | IPR001680 |
| SMART | SM00320 | WD40_4 | 334 | 375 | 0.87 | IPR001680 |
| SMART | SM00320 | WD40_4 | 203 | 242 | 1.7 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 210 | 251 | 9.238559 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 73 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 34 | 62 | - | - |
| Coils | Coil | Coil | 152 | 172 | - | - |
| Coils | Coil | Coil | 34 | 54 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G01470.1 | SEC12P-like 2 protein. Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. | 0 |
| RefSeq | XP_019707090.2 | SEC12-like protein 2 [Elaeis guineensis] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A6J0PJP3 | SEC12-like protein 2 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105048664 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology