Basic Information
Locus ID:
scaffold003614G000060
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
leucine-rich repeat receptor-like protein kinase At5g49770
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold003614 | 129074 | 144862 | - | scaffold003614G000060 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 108,214.37 Da | 38.13 | 89.03 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 645 | 912 | 4.29644E-94 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 643 | 908 | 2.1E-47 | IPR001245 |
| SUPERFAMILY | SSF52058 | L domain-like | 73 | 429 | 1.87E-49 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 625 | 920 | 4.45E-78 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 225 | 313 | 1.7E-18 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 611 | 714 | 4.6E-36 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 715 | 930 | 2.8E-56 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 55 | 220 | 3.3E-41 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 314 | 453 | 8.0E-14 | IPR032675 |
| SMART | SM00220 | serkin_6 | 639 | 913 | 1.8E-35 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 296 | 318 | 7.365424 | IPR001611 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 639 | 913 | 38.845192 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 645 | 667 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 759 | 771 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79620.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_038980380.1 | probable leucine-rich repeat receptor-like protein kinase At5g49770 isoform X1 [Phoenix dactylifera] | 0 |
| Q8GZ99 | Leucine-rich repeat receptor protein kinase HPCA1 OS=Arabidopsis thaliana OX=3702 GN=HPCA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9A1A8 | probable leucine-rich repeat receptor-like protein kinase At5g49770 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103702241 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology