Basic Information
Locus ID:
scaffold002988G000020
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
High mobility group
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold002988 | 440563 | 442209 | + | scaffold002988G000020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.32 | 40,475.66 Da | 56.77 | 64.25 | -0.86 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01390 | HMGB-UBF_HMG-box | 165 | 229 | 6.55437E-21 | - |
| Pfam | PF00505 | HMG (high mobility group) box | 165 | 232 | 1.4E-15 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 1 | 49 | 1.31E-10 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 156 | 236 | 7.33E-21 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 149 | 243 | 8.0E-22 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 1 | 48 | 7.3E-8 | IPR036431 |
| SMART | SM00398 | hmgende2 | 164 | 233 | 1.3E-18 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 1 | 43 | 13.662302 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 165 | 232 | 14.89486 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 283 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 360 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 267 | 360 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_010908015.1 | high mobility group B protein 15 [Elaeis guineensis] | 0 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9QEC9 | high mobility group B protein 15 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105034518 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology