Basic Information
Locus ID:
scaffold002973G000030
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold002973 | 59797 | 60270 | - | scaffold002973G000030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.33 | 17,711.82 Da | 50.30 | 77.07 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01767 | UBX | 81 | 155 | 4.1472E-16 | - |
| Pfam | PF00789 | UBX domain | 75 | 145 | 1.7E-8 | IPR001012 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 66 | 156 | 5.94E-19 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 73 | 155 | 1.6E-15 | - |
| ProSiteProfiles | PS50033 | UBX domain profile. | 75 | 155 | 21.636711 | IPR001012 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 53 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 26 | 51 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14570.3 | UBX domain-containing protein. | 0 |
| RefSeq | XP_026663640.2 | plant UBX domain-containing protein 7-like [Phoenix dactylifera] | 0 |
| Q94JZ8 | Plant UBX domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=PUX7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8J8W0 | plant UBX domain-containing protein 7-like OS=Phoenix dactylifera OX=42345 GN=LOC103715481 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | scaffold002973G000030 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G23605.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10021701m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g21280.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g025200.2N, BniB07g048370.2N |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005402 |