Basic Information
Locus ID:
scaffold002848G000030
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
transcription factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold002848 | 293520 | 294830 | + | scaffold002848G000030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.29 | 47,186.00 Da | 44.42 | 84.08 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd11449 | bHLH_AtAIB_like | 263 | 330 | 2.70528E-40 | - |
| Pfam | PF14215 | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 34 | 199 | 1.1E-36 | IPR025610 |
| Pfam | PF00010 | Helix-loop-helix DNA-binding domain | 269 | 314 | 2.3E-11 | IPR011598 |
| SUPERFAMILY | SSF47459 | HLH, helix-loop-helix DNA-binding domain | 263 | 331 | 8.51E-19 | IPR036638 |
| Gene3D | G3DSA:4.10.280.10 | - | 261 | 331 | 2.6E-18 | IPR036638 |
| SMART | SM00353 | finulus | 271 | 320 | 1.3E-16 | IPR011598 |
| ProSiteProfiles | PS50888 | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 265 | 314 | 17.45982 | IPR011598 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 276 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 260 | 276 | - | - |
| Coils | Coil | Coil | 304 | 331 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G17880.1 | Basic helix-loop-helix (bHLH) DNA-binding family protein. | 0 |
| RefSeq | XP_010909816.1 | transcription factor MYC2 [Elaeis guineensis] | 0 |
| A0A060KY90 | Transcription factor MYC1 OS=Solanum lycopersicum OX=4081 GN=MYC1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9QKG4 | transcription factor MYC2 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105035817 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology