Basic Information
Locus ID:
scaffold002768G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
E3 ubiquitin-protein ligase ATL23-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold002768 | 30931 | 31365 | - | scaffold002768G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 15,532.80 Da | 75.03 | 90.21 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 67 | 110 | 5.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 67 | 123 | 6.31E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 30 | 116 | 1.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 68 | 109 | 1.7E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 68 | 110 | 12.415513 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 125 | 144 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 117 | 144 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 0 |
| RefSeq | XP_010917692.1 | E3 ubiquitin-protein ligase ATL23-like [Elaeis guineensis] | 0 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9QZ07 | E3 ubiquitin-protein ligase ATL23-like OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105042256 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology