Basic Information
Locus ID:
scaffold002739G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold002739 | 355428 | 380227 | - | scaffold002739G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 61,664.78 Da | 42.91 | 92.98 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 224 | 516 | 7.99461E-46 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 269 | 304 | 0.036 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 436 | 473 | 0.0088 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 222 | 258 | 2.9E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 308 | 346 | 0.0026 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 479 | 516 | 8.8E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 218 | 516 | 1.92E-61 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 483 | 531 | 1.8E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 214 | 482 | 2.0E-57 | IPR015943 |
| SMART | SM00320 | WD40_4 | 390 | 428 | 61.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 432 | 474 | 2.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 220 | 259 | 1.3E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 477 | 517 | 1.2E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 265 | 304 | 5.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 307 | 346 | 3.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 348 | 388 | 420.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 484 | 526 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 21 | 53 | 7.987474 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 272 | 313 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 272 | 304 | 10.23196 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 227 | 260 | 11.339228 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 227 | 268 | 13.983944 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 54 | 111 | 8.314672 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 484 | 519 | 11.550137 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 325 | 348 | 8.703868 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 246 | 260 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 333 | 347 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 246 | 260 | 2.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 504 | 518 | 2.1E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_010906218.1 | WD repeat-containing protein 26 homolog [Elaeis guineensis] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9QAS2 | WD repeat-containing protein 26 homolog OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105033215 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology