Basic Information
Locus ID:
scaffold001962G000100
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Belongs to the eukaryotic ribosomal protein eS6 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold001962 | 284767 | 285890 | - | scaffold001962G000100 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.30 | 19,655.92 Da | 45.04 | 74.36 | -0.91 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01092 | Ribosomal protein S6e | 3 | 51 | 2.2E-16 | IPR001377 |
| Gene3D | G3DSA:1.20.5.2650 | - | 56 | 157 | 5.1E-39 | - |
| SMART | SM01405 | Ribosomal_S6e_2 | 1 | 51 | 2.6E-4 | IPR001377 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 172 | - | - |
| Coils | Coil | Coil | 112 | 139 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko01521 (EGFR tyrosine kinase inhibitor resistance)
map01521 (EGFR tyrosine kinase inhibitor resistance)
ko03010 (Ribosome)
map03010 (Ribosome)
ko04066 (HIF-1 signaling pathway)
map04066 (HIF-1 signaling pathway)
ko04150 (mTOR signaling pathway)
map04150 (mTOR signaling pathway)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04371 (Apelin signaling pathway)
map04371 (Apelin signaling pathway)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G10360.1 | Ribosomal protein S6e. RPS6A and RPS6B are fully redundant and essential during gametogenesis. | 0 |
| RefSeq | XP_010917302.1 | 40S ribosomal protein S6 [Elaeis guineensis] | 0 |
| Q9M3V8 | Small ribosomal subunit protein eS6 OS=Asparagus officinalis OX=4686 GN=rps6 PE=2 SV=1 | 0 | |
| TrEMBL | B3TLK9 | 40S ribosomal protein S6 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105041930 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology