Basic Information
Locus ID:
scaffold001962G000090
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Cupin-like domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold001962 | 250739 | 262971 | + | scaffold001962G000090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.58 | 89,028.26 Da | 50.24 | 88.54 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13621 | Cupin-like domain | 102 | 285 | 1.9E-17 | IPR041667 |
| Pfam | PF12937 | F-box-like | 19 | 63 | 4.4E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 12 | 76 | 2.62E-14 | IPR036047 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 83 | 291 | 1.04E-44 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 67 | 285 | 7.3E-62 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 12 | 58 | 2.3E-7 | - |
| SMART | SM00558 | cupin_9 | 137 | 295 | 4.0E-15 | IPR003347 |
| SMART | SM00256 | fbox_2 | 20 | 60 | 7.8E-4 | IPR001810 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 137 | 300 | 31.745764 | IPR003347 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 14 | 60 | 10.875178 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G78280.1 | transferases, transferring glycosyl groups. | 0 |
| RefSeq | XP_010917304.1 | F-box protein At1g78280 [Elaeis guineensis] | 0 |
| Q9M9E8 | Lysine-specific demethylase JMJ21 OS=Arabidopsis thaliana OX=3702 GN=JMJ21 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6I9QY92 | F-box protein At1g78280 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105041931 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg6131 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_23336 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023831 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g008660 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg29356, Sbi_jg3584 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg6371 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000840 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl11810, Sgl11971, Sgl17300 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015277, gene:ENSEOMG00000032924 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0011510, CQ.Regalona.r1.1BG0014450 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30041220 |
| Apiaceae | Apium graveolens | 1 | Ag2G00588 |
| Arecaceae | Cocos nucifera | 1 | scaffold001962G000090 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103717962 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.1856.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G29468 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G78280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10018079m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g33400.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB03g057650.2N, BniB05g074310.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G1317 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G1419 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g07680 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g12260 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-8770 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG06.1083 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00037228 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G00791, Lb1G06010 |
| Poaceae | Echinochloa crus-galli | 3 | AH01.3424, BH01.3778, CH01.4028 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0250760, gene-QOZ80_3BG0277440 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0178050.1, HORVU.MOREX.r3.5HG0469230.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_067519 |
| Poaceae | Oryza coarctata | 2 | Oco05G015040, Oco06G015470 |
| Poaceae | Oryza sativa | 1 | LOC_Os03g27250.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G332600 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr01G025070 |
| Poaceae | Thinopyrum elongatum | 2 | Tel2E01G609400, Tel5E01G282400 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC2AG050810, gene_TRIDC2BG054010 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G351300.1, TraesCS2B02G369400.2 ... |
| Poaceae | Zea mays | 1 | Zm00001eb018970_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g1085 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.1814, evm.TU.LG06.556 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g16100 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_7_RagTag.978 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-18986 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-18029 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-6808 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000002l.744 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010653 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8226 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9968 |
| Salicaceae | Populus euphratica | 3 | populus_peu32241, populus_peu32242, populus_peu32243 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132627552 |
| Solanaceae | Solanum chilense | 1 | SOLCI003723700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107017080 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_1281 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G1607 |
| Zosteraceae | Zostera marina | 1 | Zosma06g04340.v3.1 |