Basic Information
Locus ID:
scaffold001805G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold001805 | 211620 | 212576 | - | scaffold001805G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 34,895.14 Da | 32.87 | 102.39 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 207 | 229 | 0.47 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 233 | 255 | 2.1E-5 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 260 | 281 | 0.01 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 9 | 63 | 9.42E-5 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 72 | 309 | 1.61E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 150 | 316 | 6.8E-30 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 71 | 7.5E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 72 | 149 | 2.2E-9 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 285 | 310 | 18.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 262 | 284 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 74 | 99 | 0.22 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 46 | 71 | 92.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 233 | 257 | 9.1E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 178 | 203 | 140.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 100 | 125 | 73.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 207 | 232 | 0.0011 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010908612.1 | EIN3-binding F-box protein 1-like [Elaeis guineensis] | 0 |
| TrEMBL | A0A6I9QHM9 | EIN3-binding F-box protein 1-like OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105034953 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology