Basic Information
Locus ID:
scaffold001583G000020
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
LRR receptor-like serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold001583 | 499153 | 500832 | + | scaffold001583G000020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.64 | 60,965.55 Da | 40.17 | 106.37 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 47 | 66 | 1.5 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 448 | 504 | 2.8E-11 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 331 | 346 | 0.16 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 70 | 129 | 9.6E-11 | IPR001611 |
| Pfam | PF00560 | Leucine Rich Repeat | 379 | 401 | 1.9 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 2 | 188 | 1.62E-45 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 239 | 537 | 2.62E-50 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 307 | 356 | 1.6E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 1 | 137 | 6.0E-43 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 357 | 430 | 2.5E-12 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 138 | 306 | 6.0E-34 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 442 | 552 | 5.2E-40 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 377 | 401 | 18.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 44 | 68 | 2.2 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 491 | 514 | 200.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 92 | 116 | 4.7 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 491 | 520 | 120.0 | - |
| SMART | SM00369 | LRR_typ_2 | 467 | 490 | 41.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 515 | 538 | 360.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 330 | 354 | 18.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 68 | 97 | 760.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 44 | 65 | 76.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 116 | 136 | 20.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 330 | 345 | 120.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 377 | 403 | 200.0 | - |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 332 | 354 | 7.072797 | IPR001611 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 47 | 60 | 5.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 467 | 480 | 5.2E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_010908657.1 | receptor-like protein 46 [Elaeis guineensis] | 0 |
| TrEMBL | A0A6I9QFK9 | receptor-like protein 46 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105034985 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_18890 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021381 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g056200 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000032386 |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.3BG0017740 |
| Anacardiaceae | Pistacia vera | 6 | pistato.v30085600, pistato.v30085610, pistato.v30085720 ... |
| Apiaceae | Apium graveolens | 5 | Ag1G01409, Ag1G01533, Ag1G01534, Ag3G00393, Ag9G01364 |
| Arecaceae | Cocos nucifera | 1 | scaffold001583G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103718375 |
| Asteraceae | Flaveria trinervia | 2 | Ftri16G03062, Ftri16G18592 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT4G04220.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10027707m.g.v1.0, Thhalv10027711m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g02900.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g018820.2N, BniB04g018840.2N, BniB07g033940.2N |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.2115, evm.TU.LG15.1016 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_8_RagTag.19 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10341 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-20621 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17663 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000018l.391 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002965 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-24363 |
| Salicaceae | Populus euphratica | 1 | populus_peu04482 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132607114 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_8519 |
| Tamaricaceae | Tamarix chinensis | 1 | TC12G1643 |