Basic Information
Locus ID:
scaffold001400G000050
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
domain phosphoinositide-interacting protein 3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold001400 | 158310 | 166219 | - | scaffold001400G000050 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 31,087.28 Da | 39.60 | 90.04 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 142 | 172 | 0.0047 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 2 | 251 | 4.5E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 253 | 2.0E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 214 | 253 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 132 | 173 | 0.011 | IPR001680 |
| SMART | SM00320 | WD40_4 | 7 | 42 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 129 | 0.016 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_008801064.1 | autophagy-related protein 18a-like [Phoenix dactylifera] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A8K0IYB9 | Putative Autophagy-related protein 18a OS=Cocos nucifera OX=13894 GN=COCNU_16G003310 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology