Basic Information
Locus ID:
scaffold000778G000030
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000778 | 155803 | 178120 | + | scaffold000778G000030 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.06 | 13,229.93 Da | 34.41 | 81.09 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 8 | 22 | 0.22 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 116 | 3.14E-15 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 119 | 2.5E-13 | IPR015943 |
| SMART | SM00320 | WD40_4 | 73 | 110 | 6.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 27 | 70 | 2.2 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_009398076.1 | PREDICTED: zinc finger CCCH domain-containing protein 17 isoform X1 [Musa acuminata subsp. malaccensis] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A804IW33 | (wild Malaysian banana) hypothetical protein OS=Musa acuminata subsp. malaccensis OX=214687 GN=103982778 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology