Basic Information
Locus ID:
scaffold000691G000010
Species & Taxonomic ID:
Cocos nucifera & 13894
Genome Assembly:
GCA_008124465.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000691 | 77491 | 88532 | + | scaffold000691G000010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.67 | 50,276.32 Da | 43.38 | 83.18 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 234 | 282 | 2.16453E-13 | - |
| Pfam | PF12906 | RING-variant domain | 234 | 281 | 6.2E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 230 | 285 | 1.15E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 218 | 290 | 9.8E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 233 | 282 | 6.3E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 226 | 288 | 17.473961 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 38 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 38 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_010906568.1 | uncharacterized protein LOC105033430 isoform X4 [Elaeis guineensis] | 0 |
| TrEMBL | A0A6I9QCQ4 | uncharacterized protein LOC105033430 isoform X1 OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105033430 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology