Basic Information
Locus ID:
populus_peu38177
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold646 | 62284 | 69838 | + | populus_peu38177 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 118,917.14 Da | 44.45 | 73.53 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 929 | 961 | 0.0083 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 839 | 877 | 0.014 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 285 | 563 | 3.14E-11 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 756 | 1065 | 1.55E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 728 | 1069 | 9.0E-122 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 285 | 572 | 1.3E-17 | - |
| SMART | SM00320 | WD40_4 | 745 | 784 | 2.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 972 | 1011 | 37.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 837 | 877 | 4.0E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 795 | 834 | 0.013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 880 | 919 | 1.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 923 | 961 | 2.4E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 930 | 963 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 844 | 886 | 10.876051 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 930 | 970 | 13.11507 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 801 | 843 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 127 | 560 | 9.82809 | IPR000719 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 821 | 835 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 948 | 962 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 864 | 878 | 3.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 948 | 962 | 3.1E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 821 | 835 | 3.1E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 40 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 181 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 179 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_011026929.1 | PREDICTED: protein SPA1-RELATED 2 [Populus euphratica] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2K2BUZ9 | Protein kinase domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G094500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology