Basic Information
Locus ID:
populus_peu38137
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold28 | 58786 | 60057 | + | populus_peu38137 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.39 | 36,940.08 Da | 55.02 | 71.11 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 108 | 151 | 2.28282E-17 | - |
| Pfam | PF13639 | Ring finger domain | 108 | 151 | 8.5E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 103 | 157 | 2.22E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 84 | 156 | 1.8E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 109 | 150 | 3.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 109 | 151 | 12.858103 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 273 | 292 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 190 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G17600.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011018550.1 | PREDICTED: RING-H2 finger protein ATL52-like [Populus euphratica] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2K2BXD6 | RING-type E3 ubiquitin transferase OS=Populus trichocarpa OX=3694 GN=POPTR_001G141200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology