halophFGD

Basic Information

Locus ID: populus_peu38110

Species & Taxonomic ID: Populus euphratica & 75702

Genome Assembly: GWHAAYU00000000

Description: Pentatricopeptide repeat-containing protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold33	56786	60950	-	populus_peu38110

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.82	69,051.90 Da	34.51	83.56	-0.29

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF12854	PPR repeat	261	292	4.8E-6	IPR002885
Pfam	PF13041	PPR repeat family	123	170	2.1E-16	IPR002885
Pfam	PF13041	PPR repeat family	403	450	1.0E-12	IPR002885
Pfam	PF13041	PPR repeat family	333	381	2.7E-11	IPR002885
Pfam	PF01535	PPR repeat	91	120	0.013	IPR002885
Pfam	PF13041	PPR repeat family	197	241	9.4E-11	IPR002885
Pfam	PF01535	PPR repeat	302	331	0.19	IPR002885
SUPERFAMILY	SSF81901	HCP-like	126	294	3.66E-7	-
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	320	572	2.2E-47	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	225	319	1.1E-23	IPR011990
Gene3D	G3DSA:1.25.40.10	Tetratricopeptide repeat domain	57	224	2.9E-47	IPR011990
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	336	370	4.3E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	267	299	4.2E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	127	159	4.5E-10	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	162	194	3.3E-8	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	302	335	1.3E-4	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	231	265	6.8E-6	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	372	405	2.6E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	91	125	1.7E-5	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	197	230	2.8E-7	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	442	473	0.0012	IPR002885
TIGRFAM	TIGR00756	PPR: pentatricopeptide repeat domain	406	439	6.9E-7	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	404	438	11.509422	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	229	263	11.246351	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	194	228	11.73961	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	264	298	11.246351	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	334	368	11.761533	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	369	403	11.640958	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	439	473	10.764054	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	299	333	9.624079	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	124	158	14.10725	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	159	193	12.638436	IPR002885
ProSiteProfiles	PS51375	Pentatricopeptide (PPR) repeat profile.	89	123	10.292718	IPR002885

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K17710 (pentatricopeptide repeat domain-containing protein 1)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G21222.1	protein kinase family protein.
RefSeq	XP_011043482.1	PREDICTED: pentatricopeptide repeat-containing protein At5g21222-like isoform X1 [Populus euphratica]
Swiss-Prot	Q8S9D1	Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana OX=3702 GN=ATC401 PE=2 SV=1
TrEMBL	A0A8T2WNP4	Pentatricopeptide repeat-containing protein OS=Populus deltoides OX=3696 GN=H0E87_029577 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	2	jg3824, jg7860
Aizoaceae	Mesembryanthemum crystallinum	2	gene_10714, gene_8166
Amaranthaceae	Atriplex hortensis	2	Ah014544, Ah034904
Amaranthaceae	Beta vulgaris	4	BVRB_2g031840, BVRB_8g196490, BVRB_8g196500, BVRB_8g196530
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg21000, Sbi_jg22782, Sbi_jg24975, Sbi_jg8835
Amaranthaceae	Salicornia europaea	2	Seu_jg16657, Seu_jg19774
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00007807
Amaranthaceae	Suaeda glauca	5	Sgl42210, Sgl46980, Sgl54062, Sgl62458, Sgl67003
Amaranthaceae	Chenopodium album	6	gene:ENSEOMG00000010687, gene:ENSEOMG00000018396 ... gene:ENSEOMG00000019210, gene:ENSEOMG00000032878, gene:ENSEOMG00000047297, gene:ENSEOMG00000050856
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.2AG0016360, CQ.Regalona.r1.2BG0018130 ... CQ.Regalona.r1.8AG0020160, CQ.Regalona.r1.8BG0022280
Anacardiaceae	Pistacia vera	2	pistato.v30253400, pistato.v30256590
Apiaceae	Apium graveolens	2	Ag10G01538, Ag7G00293
Arecaceae	Cocos nucifera	1	COCNU_03G012070
Arecaceae	Phoenix dactylifera	1	gene-LOC103710907
Asparagaceae	Asparagus officinalis	3	AsparagusV1_01.1546.V1.1, AsparagusV1_07.2392.V1.1 ... AsparagusV1_07.417.V1.1
Asteraceae	Flaveria trinervia	1	Ftri3G24253
Brassicaceae	Arabidopsis thaliana	2	AT5G21222.1, AT5G25630.2
Brassicaceae	Eutrema salsugineum	2	Thhalv10003915m.g.v1.0, Thhalv10012659m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp2g21900.v2.2, Sp6g23340.v2.2
Brassicaceae	Brassica nigra	3	BniB02g041700.2N, BniB07g025020.2N, BniB07g039680.2N
Casuarinaceae	Casuarina equisetifolia	2	Ceq04G2119, Ceq06G1498
Casuarinaceae	Casuarina glauca	3	Cgl04G2313, Cgl04G2324, Cgl06G1553
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno02g12490, gene.Cymno02g13330, gene.Cymno12g02340
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate09g15860
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG07.1088, evm.TU.LG07.775
Plantaginaceae	Plantago ovata	1	Pov_00003850
Plumbaginaceae	Limonium bicolor	2	Lb7G34995, Lb7G35002
Poaceae	Echinochloa crus-galli	3	AH06.2290, BH07.3959, CH06.2313
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_6AG0521710, gene-QOZ80_6BG0474830
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.3HG0248630.1
Poaceae	Lolium multiflorum	2	gene-QYE76_051474, gene-QYE76_051482
Poaceae	Oryza coarctata	2	Oco01G005680, Oco02G005770
Poaceae	Paspalum vaginatum	1	gene-BS78_10G191200
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0204886, Pt_Chr0205057
Poaceae	Sporobolus alterniflorus	3	Chr07G014820, Chr21G007420, Chr31G007880
Poaceae	Thinopyrum elongatum	1	Tel3E01G276300
Poaceae	Triticum dicoccoides	2	gene_TRIDC3AG020600, gene_TRIDC3BG030970
Poaceae	Triticum aestivum	3	TraesCS3A02G153300.1, TraesCS3B02G179900.1 ... TraesCS3D02G160600.2
Poaceae	Zea mays	1	Zm00001eb315460_P002
Poaceae	Zoysia macrostachya	1	Zma_g29714
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.2875, evm.TU.LG05.2345, evm.TU.LG07.1110 ... evm.TU.LG23.1077
Posidoniaceae	Posidonia oceanica	2	gene.Posoc08g13310, gene.Posoc09g07670
Rhizophoraceae	Bruguiera sexangula	3	evm.TU.60417.2, evm.TU.60418.2 ... evm.TU.Scaffold_4_RagTag.1207
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-25631
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-14993
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-4712
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000008l.1113
Rhizophoraceae	Kandelia obovata	1	Maker00001456
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14184, nbisL1-mrna-9731
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-21067, nbisL1-mrna-996
Salicaceae	Populus euphratica	4	populus_peu04868, populus_peu12782, populus_peu21928 ... populus_peu38110
Solanaceae	Lycium barbarum	2	gene-LOC132603462, gene-LOC132635663
Solanaceae	Solanum chilense	2	SOLCI000411300, SOLCI005497300
Solanaceae	Solanum pennellii	2	gene-LOC107026118, gene-LOC107028521
Tamaricaceae	Reaumuria soongarica	2	STRG.32841_chr09_-, STRG.3917_chr02_+
Tamaricaceae	Tamarix chinensis	2	TC02G0334, TC12G1292
Zosteraceae	Zostera marina	1	Zosma05g13580.v3.1