Basic Information
Locus ID:
populus_peu38088
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold161 | 54724 | 57774 | + | populus_peu38088 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 71,911.86 Da | 44.42 | 94.08 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 190 | 227 | 1.44884E-6 | IPR018392 |
| Pfam | PF01476 | LysM domain | 191 | 234 | 6.9E-7 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 388 | 625 | 9.5E-41 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 334 | 628 | 8.92E-65 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 189 | 234 | 8.63E-6 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 426 | 643 | 2.9E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 333 | 424 | 4.5E-13 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 175 | 245 | 1.3E-8 | IPR036779 |
| SMART | SM00257 | LysM_2 | 190 | 234 | 3.2E-8 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 189 | 233 | 11.451794 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 350 | 632 | 32.739304 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_011041114.1 | PREDICTED: protein LYK5 isoform X1 [Populus euphratica] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | B9H5Z0 | Protein LYK5-like OS=Populus trichocarpa OX=3694 GN=POPTR_005G259600 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology