Basic Information
Locus ID:
populus_peu38040
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Bacterial extracellular solute-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold435 | 50910 | 58995 | - | populus_peu38040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.58 | 88,703.06 Da | 48.23 | 87.16 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14604 | Variant SH3 domain | 322 | 370 | 2.4E-10 | IPR001452 |
| Pfam | PF13343 | Bacterial extracellular solute-binding protein | 648 | 758 | 1.4E-9 | - |
| Pfam | PF13343 | Bacterial extracellular solute-binding protein | 561 | 633 | 2.8E-7 | - |
| SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 44 | 270 | 1.54E-14 | IPR027267 |
| SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | 501 | 719 | 8.58E-24 | - |
| SUPERFAMILY | SSF50044 | SH3-domain | 317 | 390 | 9.06E-16 | IPR036028 |
| Gene3D | G3DSA:3.40.190.10 | - | 500 | 646 | 6.6E-12 | - |
| Gene3D | G3DSA:3.40.190.10 | - | 647 | 726 | 1.3E-15 | - |
| Gene3D | G3DSA:1.20.1270.60 | Arfaptin homology (AH) domain/BAR domain | 36 | 294 | 3.1E-6 | IPR027267 |
| Gene3D | G3DSA:2.30.30.40 | SH3 Domains | 301 | 385 | 5.6E-17 | - |
| SMART | SM00326 | SH3_2 | 318 | 373 | 3.4E-14 | IPR001452 |
| ProSiteProfiles | PS50002 | Src homology 3 (SH3) domain profile. | 315 | 374 | 19.418539 | IPR001452 |
| Coils | Coil | Coil | 188 | 208 | - | - |
| Coils | Coil | Coil | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31410.1 | putrescine-binding periplasmic protein-related. | 0 |
| RefSeq | XP_011028001.1 | PREDICTED: uncharacterized protein LOC105128158 isoform X1 [Populus euphratica] | 0 |
| Q9C865 | SH3 domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=SH3P1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T2Z8T3 | SH3 domain-containing protein OS=Populus deltoides OX=3696 GN=H0E87_006820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology