Basic Information
Locus ID:
populus_peu37919
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold46 | 42646 | 45532 | + | populus_peu37919 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 24,933.85 Da | 38.05 | 96.96 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 5 | 85 | 3.97562E-52 | - |
| Pfam | PF07650 | KH domain | 10 | 83 | 3.8E-12 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 96 | 178 | 4.4E-25 | IPR001351 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 1 | 89 | 2.06E-25 | IPR009019 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 83 | 181 | 3.27E-28 | IPR036419 |
| Gene3D | G3DSA:3.30.1140.32 | - | 83 | 209 | 3.0E-66 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 82 | 3.2E-43 | IPR015946 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 1 | 200 | 4.8E-70 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 11 | 82 | 11.104576 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 137 | 173 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_034891076.1 | 40S ribosomal protein S3-3 [Populus alba] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A6M2F0Q3 | KH type-2 domain-containing protein OS=Populus davidiana OX=266767 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology