Basic Information
Locus ID:
populus_peu37737
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
DA1-related 1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold127 | 33814 | 38431 | - | populus_peu37737 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 27,289.97 Da | 65.14 | 57.47 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 151 | 203 | 7.53249E-29 | - |
| Pfam | PF00412 | LIM domain | 151 | 206 | 2.5E-9 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 144 | 176 | 9.52E-9 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 178 | 220 | 2.42E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 144 | 209 | 8.8E-15 | - |
| SMART | SM00726 | uim | 59 | 78 | 2.4 | IPR003903 |
| SMART | SM00132 | lim_4 | 150 | 202 | 7.4E-13 | IPR001781 |
| SMART | SM00726 | uim | 110 | 129 | 4.9 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 149 | 209 | 11.7316 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 151 | 185 | - | IPR001781 |
| ProSitePatterns | PS00086 | Cytochrome P450 cysteine heme-iron ligand signature. | 144 | 153 | - | IPR017972 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 105 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.2 | - | 0 |
| RefSeq | XP_034889614.1 | protein DA1-related 1-like isoform X1 [Populus alba] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6M2F4B2 | LIM zinc-binding domain-containing protein OS=Populus davidiana OX=266767 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology