Basic Information
Locus ID:
populus_peu37342
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold124 | 14280 | 22421 | + | populus_peu37342 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.26 | 70,933.13 Da | 36.52 | 73.25 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 358 | 432 | 8.84699E-49 | - |
| CDD | cd12354 | RRM3_TIA1_like | 477 | 551 | 3.68414E-35 | - |
| Pfam | PF13368 | Topoisomerase C-terminal repeat | 158 | 207 | 6.2E-10 | IPR025589 |
| Pfam | PF01396 | Topoisomerase DNA binding C4 zinc finger | 35 | 71 | 7.7E-9 | IPR013498 |
| Pfam | PF13368 | Topoisomerase C-terminal repeat | 97 | 154 | 3.2E-9 | IPR025589 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 479 | 544 | 1.2E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 359 | 429 | 7.5E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 274 | 339 | 1.3E-10 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 351 | 447 | 1.06E-26 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 464 | 555 | 1.49E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 256 | 350 | 1.34E-20 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 455 | 555 | 4.2E-23 | IPR012677 |
| Gene3D | G3DSA:3.30.65.10 | Bacterial Topoisomerase I, domain 1 | 29 | 78 | 5.6E-6 | - |
| Gene3D | G3DSA:3.30.70.330 | - | 355 | 451 | 4.1E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 204 | 354 | 4.7E-18 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 358 | 431 | 8.6E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 478 | 547 | 6.1E-16 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 273 | 342 | 3.3E-14 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 357 | 435 | 16.892406 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 272 | 346 | 14.555817 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 477 | 551 | 15.084535 | IPR000504 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_011006668.1 | PREDICTED: oligouridylate-binding protein 1-like isoform X2 [Populus euphratica] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2NBQ9 | DNA topoisomerase OS=Salix viminalis OX=40686 GN=SVIM_LOCUS481934 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology