Basic Information
Locus ID:
populus_peu37218
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold480 | 8434 | 16631 | + | populus_peu37218 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.00 | 168,275.55 Da | 38.63 | 104.78 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 628 | 828 | 1.32889E-105 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1255 | 1475 | 4.19467E-124 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 938 | 1232 | 5.6163E-94 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 314 | 602 | 3.82863E-102 | IPR044746 |
| Pfam | PF00005 | ABC transporter | 1274 | 1422 | 2.0E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 940 | 1184 | 7.6E-33 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 314 | 581 | 1.6E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 646 | 780 | 1.1E-18 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 940 | 1239 | 3.14E-48 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1249 | 1487 | 1.78E-67 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 307 | 610 | 8.5E-37 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 622 | 849 | 1.96E-56 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1240 | 1493 | 1.3E-80 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 622 | 855 | 8.6E-69 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 283 | 610 | 2.4E-51 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 906 | 1238 | 6.8E-55 | IPR036640 |
| SMART | SM00382 | AAA_5 | 655 | 828 | 3.1E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1283 | 1468 | 1.3E-13 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 628 | 851 | 21.595417 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 941 | 1220 | 35.016182 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1257 | 1491 | 17.18701 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 313 | 594 | 35.778645 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 753 | 767 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 861 | 888 | - | - |
| Coils | Coil | Coil | 475 | 495 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_011012375.1 | PREDICTED: putative ABC transporter C family member 15 isoform X1 [Populus euphratica] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2K1XXT1 | ABC-type xenobiotic transporter OS=Populus trichocarpa OX=3694 GN=POPTR_014G180100 PE=3 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology