Basic Information
Locus ID:
populus_peu37176
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold499 | 6527 | 10290 | + | populus_peu37176 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 47,625.11 Da | 48.46 | 77.74 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 297 | 327 | 0.007 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 74 | 336 | 1.25E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 82 | 413 | 3.3E-19 | IPR015943 |
| SMART | SM00320 | WD40_4 | 287 | 328 | 0.017 | IPR001680 |
| SMART | SM00320 | WD40_4 | 67 | 105 | 51.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 284 | 0.44 | IPR001680 |
| SMART | SM00320 | WD40_4 | 162 | 197 | 440.0 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_011010722.1 | PREDICTED: autophagy-related protein 18a-like [Populus euphratica] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | U5GM00 | Autophagy-related protein 18a-like OS=Populus trichocarpa OX=3694 GN=POPTR_T034900 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology