Basic Information
Locus ID:
populus_peu36715
Species & Taxonomic ID:
Populus euphratica & 75702
Genome Assembly:
GWHAAYU00000000
Short Name:
CHIA1
Description:
Endochitinase-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9 | 18191752 | 18193021 | - | populus_peu36715 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.28 | 33,757.54 Da | 34.34 | 61.10 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 72 | 301 | 6.08718E-114 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 22 | 60 | 7.71674E-17 | - |
| Pfam | PF00182 | Chitinase class I | 71 | 301 | 1.9E-131 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 23 | 60 | 8.7E-13 | IPR001002 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 68 | 307 | 5.34E-109 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 23 | 63 | 3.4E-12 | IPR036861 |
| Gene3D | G3DSA:3.30.60.10 | - | 21 | 63 | 1.1E-15 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 154 | 210 | 8.3E-121 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 71 | 302 | 8.3E-121 | - |
| SMART | SM00270 | ChitinBD_3 | 23 | 60 | 1.9E-15 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 308 | 1.4E-127 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 21 | 62 | 11.039977 | IPR001002 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. | 1 | 19 | 5.0 | - |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 214 | 224 | - | IPR000726 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 89 | 111 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 33 | 52 | - | IPR018371 |
| PRINTS | PR00451 | Chitin-binding domain signature | 31 | 39 | 2.7E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 39 | 46 | 2.7E-6 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 46 | 53 | 2.7E-6 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_011045258.1 | PREDICTED: basic endochitinase-like [Populus euphratica] | 0 |
| P21226 | Endochitinase A2 OS=Pisum sativum OX=3888 GN=CHI2 PE=1 SV=2 | 0 | |
| TrEMBL | H6WS85 | Chitinase 1 OS=Populus canadensis OX=3690 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology